Showing posts with label photosynthesis. Show all posts
Showing posts with label photosynthesis. Show all posts

Thursday, November 07, 2013

The Interaction of Light with Matter

The light turns up then down
as clouds scuttle in the wind.
Gold leaves gild my vision
and spread brassy sound
round and round.

Some are descending notes lost
in the still green honey suckle
whose red berries will fly ostinato
over the low drone of winter
and the crack of white crust.

Then there is a chorus of paw paw
singing with yellow pellucid soprano voice
in the dark drum understory,
cymbals clash in suddenly bronze light
that quickly dims to subito.




















See: http://www.npr.org/2013/11/01/242356997/einsteins-real-breakthrough-quantum-theory

Sunday, April 15, 2007

The Many Paths of Light

Seems news about a particular topic come in groups. Whether that is just due to chance, some sort of synchronicity or the "pit bull effect**". At any rate more news about light and photosynthesis, this time from physics.org:

Quantum secrets of photosynthesis revealed from PhysOrg.com

"Through photosynthesis, green plants and cyanobacteria are able to transfer sunlight energy to molecular reaction centers for conversion into chemical energy with nearly 100-percent efficiency. Speed is the key - the transfer of the solar energy takes place almost instantaneously so little energy is wasted as heat. How photosynthesis achieves this near instantaneous energy transfer is a long-standing mystery that may have finally been solved.

[...]"

Image from http://www.vdacs.virginia.gov

Note the emphasis on near 100% efficiency. Presumably they are referring to efficiency of conversion of light actually absorbed by the photosystems to chemical energy in the form of ATP and NADPH, not the conversions that take place in the Calvin cycle. According to the news reports, this efficiency results from the ability of individual photons to travel along different paths simultaneously effectively selecting the most efficient path.

This is an exciting discovery and one that needs to be watched closely because we may be able to take advantage of this principle to greatly improve solar cell efficiencies and develop efficient schemes based on photosynthesis for converting light energy to chemical energy. The other thing about this finding is that the photosystems in the chloroplast are doing what is essentially an exercise in quantum computing, which as noted in this introduction is still in its infancy. So here we have a discovery that may have important implications to two seemingly disconnected fields-energy production and computers.

**Note: the "pit bull effect" stems from my observation that reports of pit bull bites seem to come in clusters-perhaps because media attention gets focused on the breed because of one spectacular incident such as happened in Lawrence in the 1980's. Suddenly even a pit bull sneezing becomes big news for a time.

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Wednesday, April 11, 2007

Why are plants green?

My last post was about light and fortuitously today a couple of news items fit right in. Both items relate to a question I ask my students when we discuss photosynthesis, namely why are plants green. The simple answer is that the chlorophylls, the main photosynthetic pigments reflect green light and absorb red and blue light. The reflected light is of course what our eyes detect and our nervous system perceives as color and most professors seem to stop here. But I then turn the question on its head and ask why aren't plants black? After all, if the name of the game in photosynthesis is light absorption then shouldn't plants be black?

The usual response is that maybe plants can't do any better. The problem is plants that have other pigments, such as carotenes and xanthophylls that absorb light in the middle of the visible spectrum at those wave lengths that chlorophyll cannot. Another hypothesis my students often raise is that if plants absorb all the light available to them, they might overheat, much like wearing a black shirt on a hot day. Seems reasonable until you consider that plants in the shade where they ought not overheat are still typically green.

Getting to the news items, the first one from Live Science suggests that photosynthesis arose in a group of bacteria that used a simpler pigment called retinal found today in a group of bacteria (Actually Archeans) called Halobacteria . Shil DasSarma, from the University of Maryland notes that retinal absorbs best in the middle of the spectrum where chlorophyll cannot. Indeed the absorption spectra of the two pigments are eerily complementary as the accompanying figure from American Scientist shows.

DasSarma hypothesizes that retinal was used by the first photosynthetic organisms and that chlorophyll based photosynthetic organisms were able to survive because they could use wavelengths that retinal based photosynthetic organisms cannot. Since chlorophyll is more efficient than retinal, bacteria that used chlorophyll eventually out competed the earlier reddish purple hued retinal using bacteria. If so the early Earth may have been the Purple Planet and looked more like the Halobacteria rich landscape in the image to the left from NASA.


The second article from Scientific American looks at the sorts of colors photosynthetic organisms might be on other planets. Nancy Kiang from the Goddard Space Center analysed the spectra from other stars to attempt to predict what color photosynthetic organisms might be. This seems like an elaboration of a question I ask my students where I present them with a hypothetical planet Munimula (for those who remember Ruff and Ready Cartoons) orbiting a sun that produces light of the wavelengths we perceive as green. I ask the student to predict the color of plants that might evolve on such a planet. They are supposed to get the idea that the plants must be able to absorb the available light so were you to view plants from Munimula under white light, they would definitely not be green because they must have evolved to absorb the wave lengths we perceive as green.

So why are plants green? Maybe the good enough hypothesis combined with DasSarma's hypothesis is on the right track. But plants are still able to fine tune pigments. Indeed algae and other photosynthetic organisms in the ocean where short wavelengths of light penetrate further than long wavelengths, perceived as red, absorb short wavelengths and appear black or red under white light. So it seems terrestrial photosynthetic organisms ought to better fine tune their pigment systems.

I leave you with another idea that I have been thinking about. Maybe for all intents and purposes plants ARE black in the sense of absorbing as much light as possible and that it is our visual systems that have been fine tuned by evolution to be sensitive to what little light that is reflected from the leaves. What ever idea or combination of ideas is involved, sometimes the best and most interesting questions in science are what at first glance are the simplest to state.

One more little tidbit. Retinal is found not just in the Halobacteria, but is found as part of the light detection systems of the eye. So is this convergence in the use of retinal independently hit upon by the early photosynthetic organisms and animals or do we see in the visual pigments of the eye the remnants of the first invention of photosynthesis by early cells maintained in the context of light detection and image formation rather than photosynthesis.

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